Make a 3D landscape for an Ising network

Similar to make_2d_Isingland(), but two categories of nodes can be specified so the number of active nodes can be calculated separately.

Usage

make_3d_Isingland(thresholds, weiadj, x, y, beta = 1, transform = FALSE)

thresholds, weiadj: The thresholds and the weighted adjacency matrix of the Ising network. If you have an IsingFit object estimated using IsingFit::IsingFit(), you can find those two parameters in its components (<IsingFit>$thresholds and <IsingFit>$weiadj).
x, y: Two vectors specifying the indices or the names of the nodes for two categories. If they are character vectors, the names should match the row names of the thresholds matrix.
beta: The $\beta$ value for calculating the Hamiltonian.
transform: By default, this function considers the Ising network to use -1 and 1 for two states. Set transform = TRUE if the Ising network uses 0 and 1 for two states, which is often the case for the Ising networks estimated using IsingFit::IsingFit().

A 3d_Isingland object that contains the following components:

dist_raw,dist Two tibbles containing the probability distribution and the potential values for different states.
thresholds,weiadj,beta The parameters supplied to the function.
Nvar The number of variables (nodes) in the Ising network.