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All functions

MDDConnectivity MDDThresholds
Estimation data for the Ising network of major depressive disorder
autolayer(<stability_2d_Isingland>)
Get ggplot2 layers of stability metrics to add to the landscape plots
calculate_barrier(<2d_Isingland>) calculate_barrier(<2d_Isingland_matrix>) print(<barrier_2d_Isingland>) summary(<barrier_2d_Isingland>) summary(<barrier_2d_Isingland_matrix>)
Calculate energy barrier for Ising landscapes
calculate_stability()
Calculate the stability metrics for Ising landscapes
calculate_stability_se() print(<stability_se>) compare_stability()
Calculate the standard error, confidence interval, and p-value for the stability metrics of an Ising landscape using bootstrapping
chain_simulate_Isingland() make_Ising_chain()
Make Ising chains from (a series of) Ising grid(s) and perform a chain simulation.
make_2d_Isingland()
Make a 2D landscape for an Ising network
make_2d_Isingland_matrix()
Make a matrix of landscapes for multiple Ising networks
make_3d_Isingland()
Make a 3D landscape for an Ising network
single_threshold() single_wei() all_thresholds() whole_weiadj() beta_list()
Control Functions to Specify the Varying Parameters for an Ising Grid.
make_Ising_grid()
Make a Grid to Specify Multiple Ising Networks
shiny_Isingland_MDD()
A shiny app that shows the landscape for the Ising network of major depressive disorder
simulate_Isingland()
Simulate a 2D Ising landscape