Package index
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MDDConnectivity
MDDThresholds
- Estimation data for the Ising network of major depressive disorder
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autolayer(<stability_2d_Isingland>)
- Get ggplot2 layers of stability metrics to add to the landscape plots
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calculate_barrier(<2d_Isingland>)
calculate_barrier(<2d_Isingland_matrix>)
print(<barrier_2d_Isingland>)
summary(<barrier_2d_Isingland>)
summary(<barrier_2d_Isingland_matrix>)
- Calculate energy barrier for Ising landscapes
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calculate_stability()
- Calculate the stability metrics for Ising landscapes
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calculate_stability_se()
print(<stability_se>)
compare_stability()
- Calculate the standard error, confidence interval, and p-value for the stability metrics of an Ising landscape using bootstrapping
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chain_simulate_Isingland()
make_Ising_chain()
- Make Ising chains from (a series of) Ising grid(s) and perform a chain simulation.
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make_2d_Isingland()
- Make a 2D landscape for an Ising network
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make_2d_Isingland_matrix()
- Make a matrix of landscapes for multiple Ising networks
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make_3d_Isingland()
- Make a 3D landscape for an Ising network
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single_threshold()
single_wei()
all_thresholds()
whole_weiadj()
beta_list()
- Control Functions to Specify the Varying Parameters for an Ising Grid.
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make_Ising_grid()
- Make a Grid to Specify Multiple Ising Networks
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shiny_Isingland_MDD()
- A shiny app that shows the landscape for the Ising network of major depressive disorder
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simulate_Isingland()
- Simulate a 2D Ising landscape