Package index

All functions

MDDConnectivity MDDThresholds

Estimation data for the Ising network of major depressive disorder

autolayer(<stability_2d_Isingland>) autolayer(<stability_2d_Isingland_matrix>)

Get ggplot2 layers of stability metrics to add to the landscape plots

calculate_barrier(<2d_Isingland>) calculate_barrier(<2d_Isingland_matrix>) print(<barrier_2d_Isingland>) summary(<barrier_2d_Isingland>) summary(<barrier_2d_Isingland_matrix>)

Calculate energy barrier for Ising landscapes

calculate_stability()

Calculate the stability metrics for Ising landscapes

calculate_stability_se() print(<stability_se>) compare_stability()

Calculate the standard error, confidence interval, and p-value for the stability metrics of an Ising landscape using bootstrapping

chain_simulate_Isingland() make_Ising_chain()

Make Ising chains from (a series of) Ising grid(s) and perform a chain simulation.

make_2d_Isingland()

Make a 2D landscape for an Ising network

make_2d_Isingland_matrix()

Make a matrix of landscapes for multiple Ising networks

make_3d_Isingland()

Make a 3D landscape for an Ising network

single_threshold() single_wei() all_thresholds() whole_weiadj() beta_list()

Control Functions to Specify the Varying Parameters for an Ising Grid.

make_Ising_grid()

Make a Grid to Specify Multiple Ising Networks

shiny_Isingland_MDD()

A shiny app that shows the landscape for the Ising network of major depressive disorder

simulate_Isingland()

Simulate a 2D Ising landscape